Sample reads against amplification success — generate_reads_by_amplification_success_plot • ampseqQC

Sample reads against amplification success

Usage

generate_reads_by_amplification_success_plot(
  summary_samples_for_batch,
  amplification_threshold,
  sample_colours = default_sample_colours,
  reprep_threshold = 0.5,
  repool_threshold = 0.75,
  batch_name = ""
)

generate_reads_by_amplification_success_plots(
  summary_samples,
  read_threshold,
  sample_colours = default_sample_colours,
  reprep_threshold = 0.5,
  repool_threshold = 0.75
)

Arguments

summary_samples_for_batch, summary_samples: Output of summarise_samples(), for one batch or all batches.
amplification_threshold, read_threshold: Reads needed to count a target as amplified, for the axis label.
sample_colours: Named colours for each sample type.
reprep_threshold, repool_threshold: QC thresholds drawn as dashed lines.
batch_name: Batch name for the title.

Value

A ggplot, or a named list of ggplots (one per batch) for the plural function.