The amplicon coverage contains every sample that went through Mad4hatter,
so it is used to check that the manifest and pipeline sample names match.
check_sample_names() stops with an error if no names match and warns if
some samples are only in the manifest or only in the pipeline outputs.
Usage
sample_name_mismatches(manifest, amplicon_coverage)
check_sample_names(manifest, amplicon_coverage)Arguments
- manifest
Manifest from
read_manifest().- amplicon_coverage
Amplicon coverage from
read_mad4hatter_results().