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The MAD4HATTER Amplicon Sequencing

Multiplex Amplicons for Drugs, Diagnostics, Diversity, and Differentiation using High Throughput Targeted Resequencing

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The MAD4HATTER pipeline will accurately and precisely identify and quantify real biological variation from demultiplexed amplicon sequencing data. The pipeline uses nextflow to allow scientists to analyze their sequencing data on a variety of platforms seamlessly.

To get started, please refer to the getting started page.

Thank you to the contributors of the MAD4HATTER pipeline!

  • bgpalmer
  • aarandad
  • tiplud
  • kathryn1995
  • manuelgug
  • m-murphy