EPPIcenter Lab Handbook
Welcome
0.1
Mission
0.2
Vision
0.3
People
0.4
Environment
0.5
Expectations
1
Getting Started
1.1
COVID Information 😷
1.2
EPPIcenter Meetings 📅
1.3
Lab Communication
1.3.1
Communicating and meeting with Bryan
1.4
Ordering & Reimbursements (EPPIcard and MyExpense)
2
Working in the Wetlab
2.1
Wet lab spaces
2.2
Cleaning and Organization
2.3
Ordering supplies for the wetlab
2.4
Receiving shipped samples 📦
2.5
Receiving other supplies
2.6
Sequencing
2.7
Lab Notebook 📖🌐
2.8
SampleDB
2.9
Contaminations
3
Computational resources
3.1
Wynton
3.1.1
Wynton Best Practices
3.2
Aragorn
3.3
Arwen
3.4
The Mines ⛰️
3.5
Nextflow
3.6
Installing software
3.7
Github
3.8
Docker Hub
3.9
Stack Overflow for Teams
4
Sequencing Data Best Practices
4.1
SeekDeep filename guidelines
4.2
Raw sequencing data 🚧
4.2.1
Folder names 🚧
5
Open Science 🚧
6
Information for International Visiting Scholars
Published with bookdown
EPPIcenter Lab Handbook
5
Open Science 🚧
preprints, data, open access journals when possible