Usage
calculate_naive_coi(data)
Arguments
- data
List of lists of numeric vectors, where each list
element is a collection of observations across samples at a
single genetic locus.
Value
Numeric vector with one naive COI estimate per sample.
Details
Estimates the complexity of infection using a naive approach
that chooses the highest number of observed alleles.
Examples
calculate_naive_coi(simulated_data$data)
#> [1] 2 4 4 5 7 4 4 5 4 3 4 5 5 2 5 6 4 4 6 6 5 5 3 3 4 6 4 4 7 5 3 3 5 2 6 6 4
#> [38] 6 3 3 4 7 5 5 6 5 4 3 4 5 5 4 6 4 4 5 5 4 4 6 3 4 6 3 3 6 5 8 7 7 4 5 1 2
#> [75] 4 5 1 4 4 3 5 5 1 5 3 6 4 4 4 4 4 6 4 5 7 6 5 6 5 5
