Load delimited data

Usage

load_delimited_data(data, sep = ";", warn_uninformative = TRUE)

Arguments

data: data.frame containing the described data
sep: string used to separate alleles
warn_uninformative: boolean whether or not to print message when removing uninformative loci

Value

List structured for run_mcmc(); see load_long_form_data().

Details

Load data.frame with a sample_id column and the remaining columns are loci. Each cell contains a separator delimited string representing the observed alleles at that locus for that sample. Returned data contains vectors sample_ids and loci that are ordered as the results will be ordered from running the MCMC algorithm.

Examples

df <- data.frame(
  sample_id = c("S1", "S2", "S3"),
  L1 = c("A;B", "A", "B"),
  L2 = c("A", "A;C", "C")
)
dat <- load_delimited_data(df, sep = ";")
dat$sample_ids
#> [1] "S1" "S2" "S3"
dat$data[["L2"]]
#> NULL