Simulate data generated according to the assumed model
Usage
simulate_data(
mean_coi = NULL,
num_samples,
epsilon_pos,
epsilon_neg,
sample_cois = NULL,
locus_freq_alphas = NULL,
allele_freqs = NULL,
internal_relatedness_alpha = 0,
internal_relatedness_beta = 1,
internal_relatedness = NULL,
missingness = 0
)Arguments
- mean_coi
Mean multiplicity of infection drawn from a Poisson
- num_samples
Total number of biological samples to simulate
- epsilon_pos
False positive rate, expected number of false positives
- epsilon_neg
False negative rate, expected number of false negatives
- sample_cois
List of sample COIs to be used instead of simulating
- locus_freq_alphas
List of alpha vectors to be used to simulate from a Dirichlet distribution to generate allele frequencies.
- allele_freqs
List of allele frequencies to be used instead of simulating allele frequencies
- internal_relatedness_alpha
alpha parameter of beta distribution controlling the random relatedness draws for each sample
- internal_relatedness_beta
beta parameter of beta distribution controlling the random relatedness draws for each sample
- internal_relatedness
List of internal relatedness values to be used instead of simulating
- missingness
probability of data being missing