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Changelog

Source: NEWS.md

dcifer 1.5.0

  • New: a function mixMat() that combines two triangular matrices into one square matrix (useful for plotting).
  • Changes to plotRel() function:
  • Highlighted (statistically significant) entries are now specified by a logical square matrix
  • These entries can be either outlined in a different color or “amplified” (made larger than other entries), which is useful for large datasets

dcifer 1.4.0

  • Added: one-sided (one-tailed) tests for functions ibdPair(), ibdDat(), and ibdEstM(). The argument side indicates if a one- or two-sided test is performed and the side for the one-sided test.
  • matchAfreq() function now provides both updated dsmp and afreq (outputting a list of two corresponding elements). The new version allows for “extra” alleles in both dsmp and afreq.
  • Minor updates/fixes:
    • NA returned when there are no loci with data in both samples
    • names for COI match sample ID’s

dcifer 1.3.0

  • Function calcAfreq() adjusted to exclude missing data (per ID at a locus)

dcifer 1.2.1

CRAN release: 2023-12-12

  • Single locus data now allowed.

dcifer 1.2.0

CRAN release: 2022-10-31

  • New: functions formatDat() and formatAfreq() that reformat data frames containing sample data and population allele frequencies in long formats.

dcifer 1.1.1

CRAN release: 2022-08-10

  • Fix: logReval() now covers all relevant edge cases.

dcifer 1.1.0

CRAN release: 2022-08-06

  • Special case added: loci with no shared alleles (more efficient);
  • logReval() now has an argument equalr and performs additional checks. Can provide equalr = TRUE and M > 1; the result is reflected in the sum1r element of the output.

dcifer 1.0.1

CRAN release: 2022-07-15

First public release.