Function reference
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ibdDat()
- Pairwise Relatedness
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ibdPair()
- Relatedness Between Two Samples
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calcAfreq()
- Calculate Allele Frequencies
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dres
- Dcifer results
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dsmp
- Sample data
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readDat()
formatDat()
readAfreq()
formatAfreq()
- Read and Reformat Data
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generateReval()
- Grid of Parameter Values
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getCOI()
- Calculate COI
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ibdEstM()
- Estimate Relatedness and a Number of Related Strains
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logReval()
- Logarithms of
reval
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matchAfreq()
- Match Samples and Allele Frequencies
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plotColorbar()
- Colorbar
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plotRel()
- Plot Relatedness Estimates
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probUxUy()
- Likelihood for Ux, Uy
-
revals
- Parameter grid