Retrieve ColumnData for a given sample type and action. — get_sample_file_columns • sampleDB

This function provides the ColumnData S3 object for a specific sample type and action.

Usage

get_sample_file_columns(
  sample_type,
  action,
  file_type = "na",
  config_yml = Sys.getenv("SDB_CONFIG"),
  samples_file = "samples.json"
)

Arguments

sample_type: Type of the sample for which the columns are needed.
action: Desired action.
file_type: The file type being used. Default is 'na'.
config_yml: (default: Sys.getenv("SDB_PATH")) Path to the application config file
samples_file: (default: "samples.json") Path to the JSON file containing samples data.

Value

A ColumnData S3 object.